rs48753926 SNP Detail

Summary

• ID
  rs48753926
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115924268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGT TTAAAATCTA GAAGAGAAAC
  R
  TTCAAAATAC TGAATGTAGT TCATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135669161	ENSMUSSNP3181296	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320894376	CHEV_3_115833537	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48753926					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115924268 () rs orientation: forward

Symbol	Name	Function Class
D3Mit215	DNA segment, Chr 3, Massachusetts Institute of Technology 215	18 bp distal
Gm43109	predicted gene 43109	within coordinates
Rr583657	regulatory region 583657	808 bp distal
Tssr35297	transcription start site region 35297	1232 bp upstream
Tssr35298	transcription start site region 35298	1155 bp upstream
Tssr35299	transcription start site region 35299	995 bp upstream
Vcam1	vascular cell adhesion molecule 1	931 bp upstream