rs48755396 SNP Detail

Summary

• ID
  rs48755396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59169048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTTAGT GATTCCATTC
  CATTCTTGGA GACTTTGGAG CAGAAGACAT TTATGTGTGG CTTTTCTTTG ATGCTGTATT
  TTCTTTGAAG CTTGACTCGT AACTACTCTA TAGTATTTGC TTTGTAGACT TCGAAGAGGG
  AGAGATAAAT GGAAGTAGGG CATTATAATT AAGAAAACCA TTGTGTTAAA ACAAGTGATT
  R
  ATAAAGCTAT GTCTCCCTAT TAACATGCCA CTTAGGTTGT TCAGTGAGTG TGGCTAAATG
  AGACATAGTA TTAAAACAGA TTAGAGGAAC CATTCAGTTG CGTGATTCTG TTTTTCCAGA
  AGAAAAATTG AAGAGAAAAG CCCATTTTAA AGAGAGTTCT GTTTTTGTGA TTTCAATGTT
  TTTCTGTATC CAGACCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52331684	NES15284314	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48755396					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52331684	NES15284314	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59169048 () rs orientation: forward

Symbol	Name	Function Class
P4ha1	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	within coordinates
Rr215341	regulatory region 215341	448 bp distal