rs48755728 SNP Detail

Summary

• ID
  rs48755728
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115568985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAAATTC ACCCCCATCA
  AGAACCATCT CTTGCGGATT GTACTTTGCT CTGCACATTG TACCTGCTTG TCACATAAGC
  TATGAGCCGT CGCTTACATC TCACGCCGAT AACATTCACT GCCTGGCTAT TCCCACCCTG
  CCGCTCAGCA GCACATCCTT TCCTCCTAAA ATCACTCAGC AGGTGTCTTC ATGCAACTCG
  M
  AGCCTTCCAC ATACTACTCA AATGTGTGCA CAAAACCCAG GGCCTTACCC TAGGCAGGCA
  AGTCCCACAC CCTGGCCGCA TACCAACCAC TCTGATGGAC AAACAGGCCT GCGGATGAAG
  ACATAAAGAC TACAGTCTAC CCAAAGCAAG CCCACACACA CTGCACTGCA CACATCCTTC
  AGAGAAGGTT TGATGACTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60931175	NES16195606	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	C	C	A	A	A		C	A	A	C		C
ss321916292	CHEV_6_115542042	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48755728					SNP	A	A	C	A	A	C	C	A	A	A	C	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60931175	NES16195606	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115568985 () rs orientation: forward

Symbol	Name	Function Class
Mkrn2os	makorin, ring finger protein 2, opposite strand	within coordinates
Tssr62513	transcription start site region 62513	469 bp downstream
Tssr62514	transcription start site region 62514	486 bp downstream
Tssr62515	transcription start site region 62515	506 bp downstream
Tssr62516	transcription start site region 62516	519 bp downstream
Tssr62517	transcription start site region 62517	547 bp downstream