rs48756175 SNP Detail

Summary

• ID
  rs48756175
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20159481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCAAACA AGAACCACCT
  CACTGTGCAT AGTTCATGCC TCAAACTGAG ATAATGAAAT ATTTGGACCT ATTTTAATTG
  ACCATGCTAT TTGAAAATGG TTTCTTCTAA CAGCAGACAA CCAGAAGACT AATTCTCACA
  TAAAGTAGTT GACTTGGGAA GAGCATGAAA AGTCTCACCC ACCTATTCAT AAATATATAC
  M
  GAAGAAAACA CACTGTTATC CACACATAGT TATATTTGCA AACTATCTTA TGCAACCCAA
  AGGTTCTGAT TCCAATTAAC ACAGACTAAT CCACTCAACT GATTTTCCCC AGGTATGGTG
  TCTCTATGCC TATAATCACA GCTACTCCAG AGGCTGAGGT GAGAGGAATT GAATTAGGGA
  GTTCAAGGTT AGCCTGGGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss134095011	ENSMUSSNP760107	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48756175					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20159481 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22643	CpG island 22643	1058 bp distal
Rr690378	regulatory region 690378	945 bp distal
Slc9a7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	1435 bp upstream
Tssr163067	transcription start site region 163067	1467 bp upstream
Tssr163068	transcription start site region 163068	1408 bp upstream