rs48756679 SNP Detail

Summary

• ID
  rs48756679
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109531487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTTGCT GATGCATGAT
  CATCTCCTGT CCTGTTTTTT TTTTTTATTT TACATTACCG ATGACACCAT AACTAATGGC
  TTTGCACAAC CAGCTTTCCC AGCATCCCTA GCGCCCCCTA CATCTAGCTC TTCCCATGGT
  TCCTTTCTTT TCTCCTTGCT TCCTTCTGCT AGACTGTGAG CCCACTCAGG GCAAGGAGCT
  K
  GTGGAACTGC GCTCTGTATT TCTTGTAGGA TGTCTATGAA TGTTGACTGC GTGTGTGTGT
  GTGTGTGTGT ATGTGTGTGT GTGTGTGTGT GTGTGTGTGC GTGTGTGCGT GTGTGCACGT
  GTGCGTGTGT GCGTGTGTGC ATGTGTGCGT GTGCGTGTGT GTGTGTGTAA GGGTGGACAG
  GTATGAGTGA TGGAGTGATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61717766	NES17649398	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48756679					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717766	NES17649398	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109531487 () rs orientation: forward

Symbol	Name	Function Class
Meg3	maternally expressed 3	within coordinates
Mir770	microRNA 770	1268 bp downstream
Rr472783	regulatory region 472783	1737 bp proximal
Tssr115120	transcription start site region 115120	377 bp downstream
Tssr115121	transcription start site region 115121	338 bp downstream
Tssr115122	transcription start site region 115122	142 bp downstream
Tssr115123	transcription start site region 115123	874 bp upstream
Tssr115124	transcription start site region 115124	1265 bp upstream