rs48757170 SNP Detail

Summary

• ID
  rs48757170
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54813354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGG AGCTTGCAGG AGCCCAGCCG
  M
  GAGGGGGGCG CGAGAGGATG CTCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss139565727	ENSMUSSNP6898384	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
ss324638256	CHEV_14_55194734	CHEVERUD	SCREENING_POP	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs48757170					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54813354 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	within coordinates
Cpgi6463	CpG island 6463	within coordinates
Gm63340	predicted gene, 63340	1698 bp upstream
Rr389676	regulatory region 389676	1890 bp downstream
Rr389677	regulatory region 389677	within coordinates
Rr492272	regulatory region 492272	1959 bp distal
Rr492273	regulatory region 492273	1651 bp proximal
Rr492274	regulatory region 492274	1764 bp proximal
Tssr128601	transcription start site region 128601	189 bp upstream
Tssr128602	transcription start site region 128602	1583 bp downstream
Tssr128603	transcription start site region 128603	1630 bp downstream
Tssr128604	transcription start site region 128604	1646 bp downstream
Tssr128605	transcription start site region 128605	1664 bp downstream
Tssr128606	transcription start site region 128606	1681 bp downstream