rs48759164 SNP Detail

Summary

• ID
  rs48759164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41366828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGCTGG GTAGGTCTTG
  ACTTCTCTGC TAACCCTCTC CAAAACCACC TTCACAGCCA CTAGAGGTCT GTCTGTAGAT
  GACTAAAATT CAGTCAAGGT GATACTAAGG TCCCTATATG GTCCCCATAT ACGTCTCTGA
  CAAATGTATA AGTAGTTTGG AACTATTTAT GGATCTTTCA CATCAATTCA CTATAAAAAT
  Y
  GTATTGAGTC AGGACATGGT GGTGTATGCC TTAAATCTCA GCAATTGGGA GGCAGAGGCA
  GAGGGGCAGA GGGGCAGAGA CAGGCAGAGA CAGAGGCACA GATATCTGGG TTTGAGGCTA
  GCTTAGTCTA CAAAGCAAGT TCTAGGACAG CCAGGACTAT ACAAAGAATC CCTGTCTCTA
  AAAAATAAAA ATAAAAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60398212	NES15902479	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48759164					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398212	NES15902479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41366828 () rs orientation: forward

Symbol	Name	Function Class
Gm66276	predicted gene, 66276	1749 bp downstream
Rr374863	regulatory region 374863	within coordinates
Rr575947	regulatory region 575947	401 bp proximal