rs48759209 SNP Detail

Summary

• ID
  rs48759209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139070613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAAACA GGTCCCAGAT
  CTTAGCAAGG GGCAGACAGG AGTGTGTTGA AAGTGGGCTC TCTCTTGCAG GGCACCTGAG
  GGGACGCAGT CATCCTGGGT ATGTCCAGTC TGGAGCAGCT GGAGCAGAAC TTGGCCTTGG
  TTGAGGAAGG GCCCCTGGAG CCGGCTGTTG TGGAAACCTT TGACCAAGCC TGGAACCTGG
  Y
  TGCCCACGAG TGCCCCAACT ACTTCCACTA AGATGCAGCT GACTTGGGGA GGTGCTGTTT
  ACTGCCTGCC CTGCCTTGAC CTGAGCTTGA TCTGATTTGG TTTTTCCCTC TTTATACAAG
  TCACTGTCTT TCTTTCTTCC CTGCTGACTT CTTATACACC CAGTTGCCTT CAATGTGAGA
  GCTGGCAGAG CCCCAATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147670708	ENSMUSSNP6922242	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48759209					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139070613 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3-ps	cyclin D3, pseudogene	1998 bp downstream
Gm13019	predicted gene 13019	within coordinates
Gm70501	predicted gene, 70501	within coordinates
Rr603196	regulatory region 603196	1412 bp distal
Rr603197	regulatory region 603197	473 bp proximal