rs48759252 SNP Detail

Summary

• ID
  rs48759252
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107171151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTCTGA TAAGCACCAT
  GTCCAAAGCA ACTAGTGGAG GAGAAGGCTT GTTTTATCTT GTAAATAACT GGGAGGAGTC
  AAAACAGAAA CTCAAGGCAG GATCCTAGAA GCAGGAACTG GTAGAGAGAA GCCATGGAGA
  CAACCTGGCT CACTCATCCT GCAATTTTTT TTTTTTGTGG GTGCAGCGAA TTTTATTGAT
  K
  GTGTTCAAGA GAGTAGGGAG GGCTTCCTAG GCCTCTCCTG TCATTATGGG GGTCTGGGAT
  GGAAATTGTG AGGGAGATGC CCAGTGTTGG GGGCCGAATT GGGATATGGA CTCCTCAGCA
  ATCGAGGGCC TCTCTCTTGC TCTCAGTGTC CTTGCTGGGG TGGGTAGCCC AGGGTTTCTT
  ACTCCTTGGA GGCCATGTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61696322	NES17647203	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48759252					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61696322	NES17647203	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107171151 () rs orientation: forward

Symbol	Name	Function Class
D12Mit122	DNA segment, Chr 12, Massachusetts Institute of Technology 122	1606 bp distal
Gm5187	predicted gene 5187	184 bp downstream