rs48760453 SNP Detail

Summary

• ID
  rs48760453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112424858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACC CCCAGCAGCA GTGCATAACT
  R
  CTCAGCAGGG CACGTGGACT GCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52696959	NES15533601	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A		G	G	A	G		A
ss324528915	CHEV_13_113078532	CHEVERUD	SCREENING_POP	f	SNP								G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48760453					SNP	A	A	A	A	A	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696959	NES15533601	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112424858 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	127 bp upstream
Rr486330	regulatory region 486330	within coordinates
Rr486331	regulatory region 486331	507 bp proximal
Tssr121099	transcription start site region 121099	172 bp upstream
Tssr121100	transcription start site region 121100	192 bp upstream
Tssr121101	transcription start site region 121101	256 bp upstream
Tssr121102	transcription start site region 121102	466 bp upstream
Tssr124046	transcription start site region 124046	824 bp downstream