rs48760926 SNP Detail

Summary

• ID
  rs48760926
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91011311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA CTCCAAACCC AGCCATGGCC
  C
  ATAGCATCTC ATTCCCCCTA GCCCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146923545	ENSMUSSNP6568751	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320391927	CHEV_2_91021123	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48760926					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91011311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	1153 bp proximal
Gm74571	predicted gene, 74571	1223 bp upstream
Madd	MAP-kinase activating death domain	within coordinates
Rr560660	regulatory region 560660	856 bp proximal
Rr560661	regulatory region 560661	1234 bp proximal
Rr560662	regulatory region 560662	1689 bp proximal
Rr560663	regulatory region 560663	1872 bp proximal
Rr560664	regulatory region 560664	1931 bp proximal
Tssr18868	transcription start site region 18868	1217 bp upstream
Tssr25161	transcription start site region 25161	1902 bp downstream
Tssr25162	transcription start site region 25162	1975 bp downstream