rs48761552 SNP Detail

Summary

• ID
  rs48761552
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:102475858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTCTCAA AGTCTCACGG GTAACAGCTG TGTAAAACAA
  AGCATCTCCC TGGTTCCTCC TCCTTGCCCT CGGCTCCAAG CCTCATTGAG ATCAGTGTCC
  W
  CTGAAATGGA GCATGCGGGA CACATGTGGG AAAGTCACCA TTAGCCTAGA GCCTTACAGA
  CCCAAGGGGA CAGGAGCAGT GGCTCCATCT CTACAGAGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss52607031	NES15454452	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T		A	T		T	T	A
ss138005903	ENSMUSSNP2090509	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						T
ss324142528	CHEV_12_103747809	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs48761552					SNP	A	A	T	T	T	A	T	T	A	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52607031	NES15454452	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:102475858 () rs orientation: forward

Symbol	Name	Function Class
Rr265894	regulatory region 265894	544 bp proximal