rs48762587 SNP Detail

Summary

• ID
  rs48762587
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:95358867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGTTTGTTTC CCTGCATCCT CCAGGATCTT TTTCATCTCC
  AATTCCTTGG GCCCTCACCA CCAGCAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  C
  CCGAAAAGTA AACTCCGCCT TAGCAACACC CTCCCCCAAT CGATCGTCCA ACTCCCGCAC
  GAGCCCCCCA CTTAAGGCAG ACCCGACGGA TAACCCCCCA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss144971335	ENSMUSSNP124628	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48762587					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95358867 () rs orientation: forward

Symbol	Name	Function Class
C030010F05Rik	RIKEN cDNA C030010F05 gene	10 bp upstream
Cpgi5967	CpG island 5967	within coordinates
Pde8b	phosphodiesterase 8B	Intron
Rr484049	regulatory region 484049	444 bp proximal
Rr484050	regulatory region 484050	614 bp proximal
Tssr123503	transcription start site region 123503	37 bp upstream
Tssr123504	transcription start site region 123504	686 bp downstream
Tssr123505	transcription start site region 123505	722 bp downstream
Tssr123506	transcription start site region 123506	1092 bp downstream