rs48763029 SNP Detail

Summary

• ID
  rs48763029
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70896793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGATTA GCTGGATGGC
  ATCATATGAG CCAAACTGTC TTTCAGGTAT TGCCTTCATA GTCATCTATC TCTCTGCCTT
  GCCTTGGCAA CAGCATACTA CTATGTGGCT AGTCTTTGTA AGACTCTTGT GGATGAGAGA
  TAAGAGGTAG AAAAGAAATA AATGCCATTC TCTCTTGCTC TGTCAAGGAG TCAACTAATA
  W
  AACTAGCCTG CTCATTCTTG TGTTTCATTT ATGCTGTGTG CAATCAAGCA CACTCATCGG
  ACCTATGTAT CTTGGTTGCA AAAAGAGATA TTCAGCTATG GATTTTCTAA GAGGTCATGA
  GGGTACAACA CAGATAATAC AAACGATTGA ATATCAAGTA CAGATGTGAC TTCATTTGTA
  GATCCCGGTT GAAAGACTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52652475	NES15473960	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		T	A	A	T		A
ss324416636	CHEV_13_70887552	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48763029					SNP	A	A	A	A	A	A	T	A	A	A	T	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652475	NES15473960	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70896793 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Rr284828	regulatory region 284828	1650 bp distal
Tssr123156	transcription start site region 123156	1408 bp downstream