rs48763281 SNP Detail

Summary

• ID
  rs48763281
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:50298602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTTACT TAACCTGTTC
  TCTTATAGAA CCAAGACTAC CAGCCCAGAG ATGGCACCAC CCACAAGTGG ACCTCCTACC
  TTGATCACTA ATTGAGAAAA TGTCTTACAG ATGGATCTCA TGGAGGCATT TCCCCAACTG
  AAGATCCTGT CTCTGTGAAA ACTCCATCCT GTGTCAAGTT GACACAAAAC TGTGGAGAGC
  C
  GCAATAACAT TTACCATCAT AAGATGGTGC TGGCTCCGCA GTGCCTTATG CCACCTAAAC
  AAAGAACTAG CTATATGTGC ATGTGCTAGG AGCAAAAGCC CGCCAAAAGT CACTAGCCCA
  CCCCGGGGCT TGGGAGATTG TGGGTGGAGC TACCAGTCAT AGTTAGGCAC ATCACACCAG
  AGGGTATTTA AGCAACACGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139454978	ENSMUSSNP3180531	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324615151	CHEV_14_50680820	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48763281					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:50298602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6404	CpG island 6404	535 bp proximal
Gm37194	predicted gene, 37194	215 bp upstream
Rr491685	regulatory region 491685	within coordinates
Rr491686	regulatory region 491686	1462 bp proximal
Rr491687	regulatory region 491687	1522 bp proximal
Tssr125363	transcription start site region 125363	212 bp upstream
Tssr125364	transcription start site region 125364	1135 bp upstream