rs48763966 SNP Detail

Summary

• ID
  rs48763966
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90879798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCTGCTTCAT CAATAACTGT ATTCAAATCA GTAAGCCCTG
  GAGTGAAACT GCCTGGTTTG ATTTCTGTCT CTAACATTGA ACTTGGTTTT GTTTTTTTTT
  T
  TTTTTTTGTT TTTTTGTTTT TTTTTTTTTG GAGACAGGGT TTCTCTGTAT CTCGAACTTG
  GTTCTTTTGC TTGCTTTATA TCACAAAGTC TGCCTGTGTA G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148550147	ENSMUSSNP4682248	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs48763966					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90879798 () rs orientation: forward

Symbol	Name	Function Class
Rr319589	regulatory region 319589	798 bp distal
Rr319590	regulatory region 319590	1003 bp proximal
Rr322310	regulatory region 322310	798 bp distal
Rr322311	regulatory region 322311	403 bp proximal
Rr328104	regulatory region 328104	1404 bp proximal
Rr404954	regulatory region 404954	1183 bp downstream
Tssr139335	transcription start site region 139335	28 bp upstream