rs48764164 SNP Detail

Summary

• ID
  rs48764164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31898081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGTGAGG TAGGCTCCTG
  GAGCTATGGA TACACCACAG ACTTTAGTCC CACCAGCTAG CCAGTTCCCA ATTAGCCAGG
  CAAATGATCC TTAATGAACC CGCCACCCAT AATCAACCAT AACCAACCAG CTACCTTTAA
  TCAACCAGCT GCTTAATCTG TTAAGAGCCA TCCAAACCAT AACCGGTCAC TAGACCATAA
  Y
  CAAGCAACCG GCCAACCTGT AACTAGCATT TTGCTGACGA CCAGGCAGCT TATGCTAAGT
  CATAAGCCAT AACCTGGACT CTAATCAGCC AAGGCACTCA CTGACCATTC AACCATTCTA
  CTCTACCCAA CCCTCTAATC TATAACCAGT TAGCTTAATC TATAATCAGT TGTCTGACCC
  AGTATACCCA GCAATGAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60257443	NES15753525	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48764164					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257443	NES15753525	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31898081 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	within coordinates
D17Rua3	DNA segment, Chr 17, Rutgers University 3	within coordinates
Gm50222	predicted gene, 50222	within coordinates
Rr525551	regulatory region 525551	1943 bp proximal
Tssr143680	transcription start site region 143680	1168 bp downstream
Tssr143681	transcription start site region 143681	173 bp downstream
Tssr143682	transcription start site region 143682	462 bp upstream
Tssr143683	transcription start site region 143683	532 bp upstream
Tssr143684	transcription start site region 143684	1895 bp upstream
Tssr143685	transcription start site region 143685	1935 bp upstream
Tssr147305	transcription start site region 147305	983 bp upstream
Tssr147306	transcription start site region 147306	941 bp upstream
Tssr147307	transcription start site region 147307	913 bp upstream
Tssr147308	transcription start site region 147308	567 bp upstream