rs48765509 SNP Detail

Summary

• ID
  rs48765509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31278412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAAC TGCTGTAGGA TATAGGTTTC
  Y
  ATACAACATT ATGGTTTGAT ACAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145455241	ENSMUSSNP6788020	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48765509					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31278412 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	within coordinates
Cpgi8940	CpG island 8940	1077 bp distal
Gm55872	predicted gene, 55872	166 bp upstream
Rr525355	regulatory region 525355	1701 bp distal
Rr525356	regulatory region 525356	within coordinates
Rr525357	regulatory region 525357	1354 bp distal
Rr525358	regulatory region 525358	1154 bp distal
Rr525359	regulatory region 525359	818 bp proximal
Tssr143637	transcription start site region 143637	1739 bp downstream
Tssr143638	transcription start site region 143638	1725 bp downstream
Tssr143639	transcription start site region 143639	1704 bp downstream
Tssr143640	transcription start site region 143640	1689 bp downstream
Tssr143641	transcription start site region 143641	1660 bp downstream