rs48765763 SNP Detail

Summary

• ID
  rs48765763
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3646581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTTTTCTT TTTTTTTTTT TTTCTTTTTT TTTTTTTTTT
  TAAAGATGAG GGCCTCCCAG TAGCCCTGGC TAGCTTTGAC AGCAATCACA TGGGCCACCA
  Y
  ACTCAGCTTT TGGTGGGCAT TTTGAATCAG GGTGTCCTAG CACTCACTGG CTTGTTACTG
  CTTCTAGCCT GGGCTGGTGT GAAGCTCCTT TCTCAGTTTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61076729	NES16055132	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48765763					SNP	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076729	NES16055132	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3646581 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	within coordinates
Rr180906	regulatory region 180906	381 bp distal
Rr189485	regulatory region 189485	1820 bp proximal
Rr381636	regulatory region 381636	842 bp upstream
Tssr76064	transcription start site region 76064	57 bp downstream
Tssr76065	transcription start site region 76065	1734 bp upstream
Tssr76066	transcription start site region 76066	1758 bp upstream
Tssr76067	transcription start site region 76067	1773 bp upstream
Tssr76068	transcription start site region 76068	1790 bp upstream
Tssr76069	transcription start site region 76069	1862 bp upstream