rs48768417 SNP Detail

Summary

• ID
  rs48768417
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77922211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCCAG CTGACTTGCA
  GACCTAACTC TGTCAGATTC AGGTCTGCAT GACAAGCTAG CTATGCAGGG GTGAGATGAA
  GGGTGGTAGG AGGTGGTGGT TTGAGCAACC TCAGCAGGCT ATTTCCCTCC CCGACCCCCT
  TTTTCAATAG GGTGTAGCTC TGGCTGATCG GCTGACCTTG AACTCACAGA GGTCCAGCTG
  R
  CTCTGCCTCT TGAATGCTGG GATTAAAGGT GTGCTCCATC ATGCTCAGCT TAAATATTTT
  GTTGTTGTTT GTTTGTTTGT CCATTTGAAG GTATCAAAAG TCAATCTCAG CTATCAACTG
  AAGCTGAGTA TGGTAGCCTA TGCCTATAAA TCCCACGGTC AGAAGGCTGA GGCAGGAGGA
  TTGTCAAAAG CTCGAGACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136663650	ENSMUSSNP6703468	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48768417					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77922211 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	831 bp upstream
Gm39375	predicted gene, 39375	89 bp upstream
Gm69108	predicted gene, 69108	1006 bp upstream
Rr683457	regulatory region 683457	872 bp distal