rs48769378 SNP Detail

Summary

• ID
  rs48769378
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25349277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTCTACT GTCTAATGCC CTCTGGTGGC CTCCAAGACA
  ACGCCTCTGT GCTACCTGGG TGGGGCTTGC AAGTGTGGGA CATCTAAGCC TTAGAGAGTT
  S
  TGGCTCTACC AGACCAGGAC GCTCTCAGCT TCTGTGCTGG CCACGCAGAA TCAACACAGT
  AGGTCTGAGA AAGCTCTGCT GCCTGCCTTA AGACCTAGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146378499	ENSMUSSNP1603349	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48769378					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25349277 () rs orientation: forward

Symbol	Name	Function Class
Clic3	chloride intracellular channel 3	488 bp downstream
Cpgi11321	CpG island 11321	1285 bp proximal
Gm74786	predicted gene, 74786	1788 bp upstream
Paxx	non-homologous end joining factor	within coordinates
Rr42075	regulatory region 42075	within coordinates
Rr56429	regulatory region 56429	1476 bp distal
Rr56430	regulatory region 56430	676 bp distal
Rr56431	regulatory region 56431	323 bp proximal
Rr396822	regulatory region 396822	1628 bp upstream
Tssr16723	transcription start site region 16723	1595 bp downstream
Tssr16724	transcription start site region 16724	1936 bp upstream
Tssr22977	transcription start site region 22977	1641 bp downstream
Tssr22978	transcription start site region 22978	1668 bp downstream
Tssr22979	transcription start site region 22979	1705 bp downstream
Tssr22980	transcription start site region 22980	1728 bp downstream
Tssr22981	transcription start site region 22981	1756 bp downstream
Tssr22982	transcription start site region 22982	1804 bp downstream
Tssr22983	transcription start site region 22983	1842 bp downstream
Tssr22984	transcription start site region 22984	1853 bp downstream