rs48769713 SNP Detail

Summary

• ID
  rs48769713
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34583022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGGGCA AAAAGAGACT
  AGAGGACTAA GGGAAGTGTG GAAGCTCGCA TCTAATTCTG TATCTATGCA GCACTTTTGA
  CTTGTCCTCC GTTTTTAAGC TGTTCCCTTG GATTGCCCAT ACATGGTCAC AACAATCCCA
  CAGAATGCCC ATCCAACCAA TCTCATTGTT TAATCAACAT TTCTGAGACC CAGGCTTGTG
  W
  AATCCTCCAA CAGAAGAGCA GAGGAAGCAA AAAGTTTGAA AAGGTGTGGC TCTGAGGCTT
  CCTTGTGAGC TGAGCCATGT TCTTAGTTTC TTTATCTTGT TTTGTAGACA TCCGCATAGC
  CAGATGAGCT GGCAATGAGA GCAGTCTGCA GCTGTGCATT TCCACATACA TTAATTGCCT
  TCCCTTCAAT CTATGGTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63254892	NES17488614	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48769713					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63254892	NES17488614	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34583022 () rs orientation: forward

Symbol	Name	Function Class
Rr405932	regulatory region 405932	1890 bp upstream
Rr546756	regulatory region 546756	1858 bp proximal
Tssr156136	transcription start site region 156136	1901 bp upstream