rs48771220 SNP Detail

Summary

• ID
  rs48771220
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11889109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATAAACG TGTGTTCGAA
  ACCATGGTGC AAGATAGAAT ATTTGTCTAG AGATCAGTTT TCAATAGGCC AGGAGCAAGA
  TAGTCGATTT TTATTAATAA CGAAAAGTAT TAAATAGAAA TAAAGTGAAA GATGAAGACC
  TTTAGATCGG AGGGTGTTGA AGCCATGGCG GTTGAAACAG ATGACAGTGG GAATGGTTGA
  K
  GTCCCAGAGT ACGAGGGTGC TGACTTCTCA CCTGTCTCCT GCCATGCTTA GGAAGCCCTG
  GACTTGTTTG TTTCTGTTCT ACATCTCAAA GAAGTTCTGC AGATTGTGAG GGGGTGGAAA
  TTAGCAAGAC TGTGTAAGAA CCTTGTGAAG ATGTTAATAC TGGTCAATAC TGGCATCAAG
  GGGTCTCCAT CAAAGGGCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60574283	NES16042071	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48771220					SNP	G	G	G	G	G	G	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60574283	NES16042071	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11889109 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Tex29	testis expressed 29	1379 bp upstream
Tssr76253	transcription start site region 76253	1392 bp upstream
Tssr76254	transcription start site region 76254	1405 bp upstream
Tssr76255	transcription start site region 76255	1459 bp upstream