rs48771613 SNP Detail

Summary

• ID
  rs48771613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41581705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACACAAGC CTTCCCCATT
  CTCAGCAGGC TTCTCCATGT CAATACGTTT GGTACAACAG CTTTCCCAAC TCTACAGTTC
  TGTCAGTGAA CTATGAATAT GTTTAAATAT TTTCCAGATT CATCATGGAA GCTGCTTTTC
  TTCTCTGCAC TGTAATCACA CTGAGCTGCA AACAAAATAA ACAATCAGTA AGTAGTTTCT
  Y
  TGTGGAGAGA ACGAGACTAA GATAAAGCAC AGTGTGATGT ATGTACCATA ACCAACAGTT
  ATCAAGTCAC CTGAGGGGAT GGCCTTGAAA GGTCTTTCTG TGTGATCATT CTATTTTACT
  CTTGAAGTGT CTGCATCACA TTAGAGAAAT GCATGCCAAA TGTGACACTC TATAGCTCAG
  AGTGATACAC TCTAAATTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397257	NES15898152	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48771613					SNP	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397257	NES15898152	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41581705 () rs orientation: forward

Symbol	Name	Function Class
Gm66500	predicted gene, 66500	within coordinates
Sclt1	sodium channel and clathrin linker 1	within coordinates