rs48772267 SNP Detail

Summary

• ID
  rs48772267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11448869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCAGCC AGGGCTCTAA
  TCTTCCCTCC AGGAACCAAT TACACGGCCT GGAACAGGCT CTCGAAGCTC CTGAGTTCAG
  AGCTGCTTGT GGAAGGTGGG ATCAATCCAT CTGCCCCTCA AAGCTGTCAT AAGAAGCTGA
  CTAAGAACAT GGGAAAGATG TTATTGTGCT GCAGACAGAG TCAATGGTGA CGAGCGGTGG
  Y
  GCCGCTGAGG AGTGTGCAGC CACAGTTAGG AAGGAGCTCA TTTCTGTTTT CTCACTTGAA
  CCCAGGGACT TCGTGAATGG AGCTGCATTT ATTCCCATTG CACCACTAGC TGGGACATCA
  TCATCACCAT TGGTTAATTT ATTTTTGCAC TGCTAAGTAT TGAACTCAGG GTCTTGTACA
  TGGCAGGCAG TCACGCTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52596363	NES15695674	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48772267					SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52596363	NES15695674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11448869 () rs orientation: forward

Symbol	Name	Function Class
Gm59955	predicted gene, 59955	1061 bp downstream
Rr511811	regulatory region 511811	96 bp distal
Snx29	sorting nexin 29	within coordinates
Tssr137107	transcription start site region 137107	1076 bp upstream