rs48772449 SNP Detail

Summary

• ID
  rs48772449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3768604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCGCCA GTGTGGTTTG
  CAACTGCGCT TTTGTCACGG AGCCTATATG GGGATGGGGC AAAAACCAGT CTTGCCCCCA
  CTTGCCTCTC CCAAACCACC TGCCCCATTT CCCAGCCCCT CAACTTTCAA GTTTTCACCA
  AACCCCTCTT TCTTACAGCA ATTCCTGCAG GCTCCGATAT CATCCTTCAG GGAACTCAAC
  R
  TCATCTTCTG CTCTGAGGCT GGAAAGACCC CACCCACCAC ACACAAACCA GTCAACCCGA
  TTGCAGCGGC CTCAGCTATT CACTACCCAG GTCCTCCTCC CTGGCAGTTC CTCCTCCCAC
  CGCAAGGGTG CGCTGCCGCC CTGCGCTGCA GCTCCTCACG CACCATTTGT CCTCAGCAGG
  TCCTGGTGGC TGAGCAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076257	NES16052855	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G	G	G	G	A	G
ss148548823	ENSMUSSNP875368	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48772449					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076257	NES16052855	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3768604 () rs orientation: forward

Symbol	Name	Function Class
Clec4g	C-type lectin domain family 4, member g	within coordinates
Cpgi20034	CpG island 20034	21 bp proximal
Gm16553	predicted gene 16553	within coordinates
Rr400747	regulatory region 400747	within coordinates
Rr658970	regulatory region 658970	within coordinates
Rr658971	regulatory region 658971	116 bp proximal
Tssr80223	transcription start site region 80223	1046 bp upstream
Tssr80224	transcription start site region 80224	1022 bp upstream