rs48773010 SNP Detail

Summary

• ID
  rs48773010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:23940310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGATAGTA CTCCCATTCC
  AATTTGTCTA AACTAAACAA ACTGTATCCA AATAATCTTG AAAGGAAAAC ACACAAATGC
  TAAATTAATC ACACACACAC ACATACATAT ACACACGGGA AGAAATTCTT TAACACCCAA
  AACATATGGA GAATTTCCAA ACATTACCTT TCAAGGATGC TTTGAACATT GTTAAGACTC
  Y
  TAATCCAAAT TATTATTTTG ATTCCAATTT CTTTGTCTAA ACTTAAACTC CCAGTAACAA
  TGCAGGGACT TGCTTGTTTA TGGTATTTTC AATACACAGA AAAGATCATG CTTGTCTATG
  ACTGTTGGTA TCAGGACATC TGAAACTCTG GATATCACAT AGGTGCGACC CACACACCTG
  TTGCCAAGGC AACATCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146367609	ENSMUSSNP521095	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48773010					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:23940310 () rs orientation: forward

Symbol	Name	Function Class
Hnmt	histamine N-methyltransferase	904 bp upstream
Rr552841	regulatory region 552841	1129 bp distal
Tssr22898	transcription start site region 22898	1452 bp upstream
Tssr22899	transcription start site region 22899	1430 bp upstream
Tssr22900	transcription start site region 22900	918 bp upstream
Tssr22901	transcription start site region 22901	898 bp upstream
Tssr22902	transcription start site region 22902	879 bp upstream