rs48774465 SNP Detail

Summary

• ID
  rs48774465
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117160903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC CCCAAACTTG TTGACCCTTC
  G
  AGTAGAATTA AGCTCATCTC TTTAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146924563	ENSMUSSNP1690011	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324842587	CHEV_14_117322713	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48774465					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117160903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	1678 bp proximal
Gpc6	glypican 6	1824 bp upstream
Tssr127141	transcription start site region 127141	1714 bp upstream
Tssr127142	transcription start site region 127142	1768 bp upstream
Tssr127143	transcription start site region 127143	1800 bp upstream
Tssr127144	transcription start site region 127144	1888 bp upstream