rs48774549 SNP Detail

Summary

• ID
  rs48774549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:33272565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTATTT AGGGAAAGAA
  GTCTAAAGCA ACCTACATGT GTGTAATGTA ACTCACTTGC ACATGAGTTT CTATAGACAA
  TGCAAGGGAC TCCATGGTCT ACAGATAGAA ATGAGATGGT TACATGCATG AACACTGATG
  TCTTCCTGGA AAGCATGCTT GTTTGCATCC TTTAGAGTAG AATGACACAG AATGGTCCTG
  Y
  ATATAACAGT TGCTACCATT GGTCTCAAAG AGGGGAAGCA ATAGCCTTGT GGGCTGCTCA
  GGTATAGGCA ATTGGAGTCA GAGTTAAGTA GAGTCATGTA TTTAATTATA TAGTTAAACA
  ACTTAACATG TGAATGGTAG AAAGTGTTTT ATTGGAAGTC TTTAATCTAC ATATCTCCAC
  TACAATAAGG AAAAGGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60310213	NES15804529	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48774549					SNP	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60310213	NES15804529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:33272565 () rs orientation: forward

Symbol	Name	Function Class
D19Mit81	DNA segment, Chr 19, Massachusetts Institute of Technology 81	1932 bp proximal
Rnls	renalase, FAD-dependent amine oxidase	within coordinates
Rr546635	regulatory region 546635	1379 bp proximal