rs48774743 SNP Detail

Summary

• ID
  rs48774743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:74922609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGCTCC TCCACTCATC
  CACCCATTCT TGTTTCCCTG CCCTGTCATT CCCCTACTCT GGGGCATTGA ACACCCTCAG
  GGCCAAGGGC CTCTCCTCCC ACTGATGACC AACAAGGCCA TCCTCTGCCA CATATGTGGC
  CAGTGTCATG GGTCGCTCCA TGTGTATTCT TTTGTTGGTG GTCCAGTCCC CAGGAGCTCC
  R
  GGGGATCTGA CCTATTAACA CTGTTGCTCG CTCCATTGGT CTGCAAACCC CCTCAGCTCC
  TTCTGTCCCT TCTCCAACTC CTCCATTGGG AACCCCCATG CTCGGTCCAA TGGTTGGCTG
  GGAGCATCCA CCTCTGTGTT TGTCAAGCTC TGGCAGAGCC TCTCAGGAGA CAACCGTATC
  AGGCTTCCAT CAACAAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss139745426	ENSMUSSNP461931	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48774743					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:74922609 () rs orientation: forward

Symbol	Name	Function Class
Htr2a	5-hydroxytryptamine (serotonin) receptor 2A	within coordinates
Tssr126578	transcription start site region 126578	1561 bp downstream