rs48775538 SNP Detail

Summary

• ID
  rs48775538
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:29352168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTAAAAT AGCTCCTGCA
  TCTAATGAGC AAGTCATTTG TAGATAACAA TTTCTATCTG TAGCTACCCT GTGGCCACTA
  TTTCGTTTAC AAAGAGACAG TTACTTGTGG GCTGGAGGCC CCTTCCATTC TGTCATCAAG
  ATGAGGATAG TAGGTCATTT CATGCACAGA AAAGACATAC TGCTTTGCTT TGCTGGTGAG
  K
  CGACCTTGAG AATATCCTAA CCAAGAACCT GTGATAAGAG CTGGAGACAT AGGCCCCTTT
  GGGACAGTAG CTTGTCATTT TCTCCTTAAC ACCTTCTGCT TTAATATTTC AGACACTGAA
  CTTCAGCCAA AGACACCGAG TACCTGACTG GAACTCAAAA AACCGAGTCC TGTTTTCTGA
  ATTCTGCCAC AGGTTGGTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss136239115	ENSMUSSNP1022244	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48775538					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:29352168 () rs orientation: forward

Symbol	Name	Function Class
Gm68891	predicted gene, 68891	within coordinates
Ntm	neurotrimin	within coordinates
Tssr84200	transcription start site region 84200	1500 bp upstream
Tssr84201	transcription start site region 84201	1525 bp upstream