rs48775822 SNP Detail

Summary

• ID
  rs48775822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110649225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG TTCCCCCCCT CAGTTCCCTG
  Y
  GCCCCGAGTT CTGCTGCCTG CCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138692569	ENSMUSSNP3416113	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48775822					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110649225 () rs orientation: forward

Symbol	Name	Function Class
1700001K19Rik	RIKEN cDNA 1700001K19 gene	172 bp upstream
Gm53768	predicted gene, 53768	within coordinates
Rr472964	regulatory region 472964	1237 bp distal
Tssr117784	transcription start site region 117784	227 bp upstream
Tssr117785	transcription start site region 117785	168 bp upstream