rs48775826 SNP Detail

Summary

• ID
  rs48775826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67001940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTACCT CAGCCTTGAG
  ACAGTCCTAG TTCAGCAATG ACTTCCCAAT AAAGAGGCTT CTCCTCTGCC TGCAGCCTTG
  CTTCTGCCTC GGGACATCTG GCAATAATCA TTTCACTCAT TTGCACTGAA TGAATGGTGT
  CTTATTTCCT CCCTGTGTAC AAAGCCTCAA GTATGGCCAT TAGAAGCTCT CGTGTGTCAT
  Y
  GGATGTTCTG TTTTGCCAAG AAAGTCTTGT TCCCTGTTTT TAAGCTCTTA GAACAATCCC
  ATTTTAGGAT ATCTTCTATC TGGGCTGGCT TTTCAACAGT TCGCAACACG TGCTTTTTTA
  AAAGATGACT TATCCTCAAG TTTCCACATT GGGCGCCTCT CTGGGTCTCC TTTTGGAATG
  TCCTTGTATC GCTATCCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62440217	NES17246765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48775826					SNP	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62440217	NES17246765	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67001940 () rs orientation: forward

Symbol	Name	Function Class
Adra1a	adrenergic receptor, alpha 1a	within coordinates
Gm62844	predicted gene, 62844	within coordinates
Rr293226	regulatory region 293226	within coordinates
Rr389792	regulatory region 389792	760 bp downstream