rs48775954 SNP Detail

Summary

• ID
  rs48775954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114482964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATTCCA ATCACACCAA
  GTAGGCATAA AGTACTACAA AGACATCAAA TTTATTAAGG TCAGAAGCAG AACCAAGATC
  TATAAAATTG TAATTTTCAG GACTGGAGTG GGAGCTCAGT TGGTAAAGTG CAAGGGAGAG
  AGCCCAGTTC CTCGGCAGCC ATGCTAAAGG CCAGGCATGA CTTACACTGG GAATTTCAGC
  R
  GCGACACGTG GAGAATGCGG GATTCCTGGG ACTCCACAAC CAGTTAGCAT AGCCAGAGTA
  GCAGGAGAGC TTCGTCTCAA AACAAAGGTG GGCAGCCCCT GAGGCCTCCA CTGCTGAGGC
  TGACTCCCGG CTTCTCAGCG CGTCACACAG GACAGCCACA CAGGTGCGCA AGCTTACATC
  CACACAGCCA GCCACACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62042813	NES17146371	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48775954					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62042813	NES17146371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114482964 () rs orientation: forward

Symbol	Name	Function Class
Ndufs4	NADH:ubiquinone oxidoreductase core subunit S4	within coordinates
Rr275010	regulatory region 275010	764 bp distal
Rr278350	regulatory region 278350	1399 bp proximal
Rr282460	regulatory region 282460	1165 bp distal