rs48776094 SNP Detail

Summary

• ID
  rs48776094
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:66952461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTTGCT CCGTTCGTGG
  CAACTTTTCT TGGCATGTAA GACAGACAGC CTGCCCTGGC ATAGGAAGGC TCTGGAGGTT
  GTTGGACCAT CACTGTCTTC CCCGGTAGCT GGTTACTTCA TGGATGCACT CTGAGTTTCC
  AGCCTGTATG CTCAGCAGCA GTGGCCCTCA CTGATGGAAT ATCAGCCCTC GGGCAGCAAC
  M
  AGGGTCCACT CTGTCCTTGC TGGCATCTTG GATCCTTCAC ACTGTAAAAT TTTTTGCATT
  TTCTACCTTC ACGGTCTGTT ACCTGAAGTC CCATGAACAT CTTTGGATCC CTCCTCCCTC
  TTAGGAATCC AACCTCATTC ATTTTACTCC GTATTTGTAG TAGATGACCT TGACATCAGA
  GATAAAATAG AGGCTGTAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61283858	NES16894928	PERLEGEN	MM_PANEL2	f	SNP	A	A		C	C	C		A
ss323345122	CHEV_10_66579430	CHEVERUD	SCREENING_POP	f	SNP			A				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48776094					SNP	A	A	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61283858	NES16894928	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:66952461 () rs orientation: forward

Symbol	Name	Function Class
Gm67716	predicted gene, 67716	1907 bp downstream
Jmjd1c	jumonji domain containing 1C	within coordinates
Rr215832	regulatory region 215832	1661 bp distal
Rr215833	regulatory region 215833	1140 bp proximal