rs48776572 SNP Detail

Summary

• ID
  rs48776572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122362240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTATATTTC TTAGTTATTA TACAACAAAA AAAATTGGCA
  GATTATGAAT AATAGCTCAC CTACTACACA GCCCACAGAT TGAGACCTGG ACACAGCCTC
  Y
  AGGAGCAGGT GTGGGGGGAC GGGGGACGGC TTGGTGGGCA ATGGCACTGC TGCTAAACCT
  AATGCACTGA GAATCATGGG ACCAAGATGT GACGCTTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss135744547	ENSMUSSNP6439436	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320912818	CHEV_3_122271509	CHEVERUD	SCREENING_POP	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48776572					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122362240 () rs orientation: forward

Symbol	Name	Function Class
Fnbp1l	formin binding protein 1-like	within coordinates
Gm43569	predicted gene 43569	within coordinates
Rr74164	regulatory region 74164	within coordinates
Rr78947	regulatory region 78947	1640 bp distal
Tssr31506	transcription start site region 31506	1852 bp downstream
Tssr35455	transcription start site region 35455	194 bp downstream
Tssr35456	transcription start site region 35456	1119 bp downstream