rs48777988 SNP Detail

Summary

• ID
  rs48777988
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:67607947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCAAACT CTAGTTCGTG
  GAAGAGGTAT TTGTGCCCGG AGGCCAGCTT GCTTTGAACT GCTTTTCTTA GCCAGCGTGT
  GACAGGTGCT ATCTGAGCAC CAGAAATGAA CGCCTTTCAG TAGTACTAAG TATGTAATAC
  TTCCACACGT GCTGTGGCCA CGGCGGCTCT TGGCTTCTCC GTCTGAGACG CCCGATGCAC
  K
  TGAAAGACAG CAAACAGGCT GTACGGTGTG ATGATGCACT CGGAGCTTCC TGTAAGTAGT
  GTTTGGCAGC AGGTCTGCAA GAGGAAGTTT CCAAGTTCCT TATAAAGACG TGTTATTTGG
  GACGGGCGCA GTCCTAGTGT TCGGTGACGC TGAGATCTGT GGACATTGGG GAGTGCGTGG
  CTGATGTCCA GGATTGGTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144988790	ENSMUSSNP4780855	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48777988					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:67607947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19234	CpG island 19234	within coordinates
Igf1r	insulin-like growth factor I receptor	within coordinates
Tssr67104	transcription start site region 67104	127 bp upstream