rs48778012 SNP Detail

Summary

• ID
  rs48778012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26138741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATACTGC GACCAGGTAT
  GGTGTCAGAA GGTGACGGGG CTGGAGAGAT GGCTTACTGA TTGTGAGCAC TGGTTGCTCT
  TCCAGAGGAC CTAGGTTCAG TTCCCAGCAC TCGAACGCTG GCTCAGTTCC AGGGGATCCA
  ACACTCTTCT GAACTCCAGA GGCATTGAGC ACACATGTTC AGGAAAAATA TATTCATGCA
  Y
  TTAGAGTGAA ATAAATAAGT CTTCAAAGAA CAAAGAGAGG TGACGGCATA GTGTCTGGTT
  GTTAGTAGTC CACCATTACC ATTCATGCCC ATCTGTAGTC AGAGAGCACT AAAAACCCTG
  GGTGCTTTTT AGGACTAGGT GTTTACTATG AGTGATTGTC CTTTTATTTA CAGCCACGAT
  CCTCTGTTTT CACTGAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60582758	NES16331122	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48778012					SNP	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60582758	NES16331122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26138741 () rs orientation: forward

Symbol	Name	Function Class
Nsd3	nuclear receptor binding SET domain protein 3	within coordinates
Tssr76701	transcription start site region 76701	672 bp upstream