rs48778466 SNP Detail

Summary

• ID
  rs48778466
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:23293398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATT GTGAGCAAAG CTAAGAAAGA
  C
  CATGCATTCA TGTGTAACGG GTGGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148843658	ENSMUSSNP2533203	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322527924	CHEV_8_23913854	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48778466					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23293398 () rs orientation: forward

Symbol	Name	Function Class
Ap3m2	adaptor-related protein complex 3, mu 2 subunit	within coordinates
Cpgi20156	CpG island 20156	1925 bp proximal
D8Dcr5	DNA Segment, Chr 8, Derry C. Roopenian 5	1268 bp distal
Rr381798	regulatory region 381798	within coordinates
Tssr80611	transcription start site region 80611	501 bp downstream