rs48778949 SNP Detail

Summary

• ID
  rs48778949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:93613180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGGCCAT CTTTTGAGAG
  TTGGGGAGGC GGTTTAGCAG AGTCAACCCT GTCAGGCTTC CATATCCCAG GTCCAAGCCC
  GGTGTCCCTT CCATGACATC TAACATGAGC TCCAGGAAGG ACCACAACTG AGGTGTGTTG
  ACTGATCATT TAATGTATTT AGCGTTCACT GTCTTGGGCC CAAGGATTGC TATGGGAAGA
  Y
  GTTTGTCTTT CAGTTTATGC CTGTGCAAGC ACCCAGTGAG GAAGAGAAGA ACGATCCTGT
  CCTTTTCGCC AGTAGAATCC GGAACTTAAT GGCTGAGTAA GTATGTCCTG GAGGTTTCAA
  CTGATAATGA GAATTAATGG TAAATATCAT TTAACCCTCC AACCCCCATG GTTCTCATTC
  AGCAACTCTC TTCAGATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	PWD/PhJ
ss52497070	NES15687150	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	PWD/PhJ
rs48778949					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52497070	NES15687150	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:93613180 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lpcat2	lysophosphatidylcholine acyltransferase 2			Intron
				Noncoding-Transcript-Variant
Tssr78766	transcription start site region 78766			673 bp downstream
Tssr78767	transcription start site region 78767			848 bp upstream
Tssr78768	transcription start site region 78768			897 bp upstream