rs48779452 SNP Detail

Summary

• ID
  rs48779452
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44390056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCCTCCC TCCTTCGCGA ATCAAGTGTC ACCACTTCCA
  AGTCCATCAG ACTGGCACGC TAGGAGTTAA GTCTGCCCGC AATCCGCAAG ACTGGAGCCG
  G
  AGAGGGGGGA GGAGGGGGGA GGGGGAAAGC AAGGAGCTGG GGGAAGCAGA CTGCAGGGAG
  ACAGCGCCTG GAACCCCCTC CCCAGGGACC TGGCCCTGG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322940982	CHEV_9_44286842	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48779452					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44390056 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	25 bp distal
Cpgi21660	CpG island 21660	397 bp proximal
Cpgi21661	CpG island 21661	1148 bp proximal
Gm10023	predicted gene 10023	within coordinates
Gm47204	predicted gene, 47204	within coordinates
Rr368728	regulatory region 368728	1317 bp upstream
Rr677665	regulatory region 677665	290 bp distal
Rr677666	regulatory region 677666	765 bp distal
Rr677667	regulatory region 677667	within coordinates
Rr677668	regulatory region 677668	603 bp proximal
Rr677669	regulatory region 677669	1028 bp proximal
Rr677670	regulatory region 677670	1491 bp proximal
Tssr89164	transcription start site region 89164	965 bp downstream
Tssr89165	transcription start site region 89165	993 bp downstream