rs48780069 SNP Detail

Summary

• ID
  rs48780069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122670709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG CTACAGCAGA TGCCAAGTGC
  Y
  GGGGTTAAAG CTCAGAGCCA CGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145812215	ENSMUSSNP5321510	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322846787	CHEV_8_124467870	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48780069					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122670709 () rs orientation: forward

Symbol	Name	Function Class
Car5a	carbonic anhydrase 5a, mitochondrial	within coordinates
Rr671979	regulatory region 671979	601 bp distal
Rr671980	regulatory region 671980	924 bp proximal
Tssr83252	transcription start site region 83252	879 bp downstream
Tssr83253	transcription start site region 83253	916 bp downstream