rs48780268 SNP Detail

Summary

• ID
  rs48780268
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142944612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG AACAGAGTAC CGGATGGCAG
  G
  GAGGGCACCC TCAGTATCGG GTTTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144594635	ENSMUSSNP4235759	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48780268					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142944612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	1132 bp proximal
Fscn1	fascin actin-bundling protein 1	1498 bp upstream
Rr378736	regulatory region 378736	1340 bp upstream
Rr624073	regulatory region 624073	1336 bp distal
Rr624074	regulatory region 624074	996 bp proximal
Tssr49613	transcription start site region 49613	1491 bp upstream
Tssr49614	transcription start site region 49614	1620 bp upstream