rs48780543 SNP Detail

Summary

• ID
  rs48780543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24727868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTCTGT TCACTTCTGT
  GTCTCCATTA CCAAACCACA GACCTTCAAA GGCTGGGTCT GGCTGCTGTG TCATCTGTCT
  GTGACAACTG CACAGAGGCC AGATCAGGGC AGGGACTGCT GTATCTCACG TCCCATAATC
  CTTGGCTGGG CTTGGAACAC CACTGTTGTC TCCTGGGCCT TCCTTCAAGC TGTCTTCTTC
  Y
  CCTGTACCAC GCTGGAACCC ACCTAAGTTT AAACACTTCC TCAAGCATGT CACTGCCCCA
  CATGGCCACC ATCCTGGGGG GTCCCCAGAA CAGTGTGTCT GATCCCCAGA TCCTTGCTCT
  ATGCAGAGTG GCCTCCATAC CCACCACTTT ACATGTGAAG AAATGGAAAC ATGGAGAGGG
  TGGACACATG GATGTAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60981551	NES16150021	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48780543					SNP	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60981551	NES16150021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24727868 () rs orientation: forward

Symbol	Name	Function Class
Grik5	glutamate receptor, ionotropic, kainate 5 (gamma 2)	within coordinates
Tssr71157	transcription start site region 71157	1568 bp downstream