rs48780564 SNP Detail

Summary

• ID
  rs48780564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59039138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAGTGGT TCAAAAGATG CCAGCCCCCT CTTTGGGACA
  CACATGCCCT GTCCTTGTGG GATGCTAATT GTGCCCAGTC TGCACCATCC TTTAGTGGTG
  Y
  GTAGGGACTT CCGACCTTTC TCCAGTTTAT CAGCACAACT CCGGTCTGAT TTTGGATAGC
  ACTATTTCCA TGTTGGTTTG CTAACTGACC TGTTTCTGAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415181	NES15910274	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48780564					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415181	NES15910274	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59039138 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Rr577320	regulatory region 577320	1106 bp distal
Rr577321	regulatory region 577321	865 bp distal
Rr577322	regulatory region 577322	401 bp distal
Rr577323	regulatory region 577323	300 bp distal
Rr577324	regulatory region 577324	288 bp proximal
Rr577325	regulatory region 577325	1516 bp proximal
Tssr29228	transcription start site region 29228	148 bp upstream
Tssr29229	transcription start site region 29229	578 bp upstream
Tssr33381	transcription start site region 33381	1174 bp upstream
Tssr33382	transcription start site region 33382	1114 bp upstream
Tssr33383	transcription start site region 33383	1089 bp upstream
Tssr33384	transcription start site region 33384	1077 bp upstream
Tssr33385	transcription start site region 33385	1057 bp upstream
Tssr33386	transcription start site region 33386	1026 bp upstream
Tssr33387	transcription start site region 33387	953 bp upstream
Tssr33388	transcription start site region 33388	636 bp upstream
Tssr33389	transcription start site region 33389	623 bp upstream
Tssr33390	transcription start site region 33390	576 bp upstream
Tssr33391	transcription start site region 33391	478 bp upstream