rs48780860 SNP Detail

Summary

• ID
  rs48780860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:81172238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCTCCTGATA TGTGTCTGTC CATAGATATA TGTATCTGAT
  TTGTAAAGTA GGATCTCAGA GGAAGAGAGA AGGAAAGGAC CTAGTTGTGG AGAGCCGTGC
  Y
  GCGAGCAATC GCCATTATAA GATGGCGCTG GCTTCCGCTG TGCCTAACTA GTAAACAAGC
  CTTGTGCGCA AGTGCGAGAG TGAACTCACG CCTAGTCACT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144754091	ENSMUSSNP1435566	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48780860					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:81172238 () rs orientation: forward

Symbol	Name	Function Class
9330111N05Rik	RIKEN cDNA 9330111N05 gene	within coordinates
Rr273817	regulatory region 273817	1438 bp distal
Rr280377	regulatory region 280377	1404 bp distal
Rr285039	regulatory region 285039	763 bp proximal
Rr286363	regulatory region 286363	1100 bp proximal