rs48780950 SNP Detail

Summary

• ID
  rs48780950
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:8542782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCAGGGAA AGTGCACAGA GGTCTGGAGC TCAGCTGTGC
  TTCCTGGCTG AAGATGAAGG CCTGAAAGGG GCCCTGTCCC AGAAGGTATG TTGCTTCTGC
  W
  GCCCGAGTGC TCTCCTGTGC AGACTGGTCT CTGAGGGACC TGGGATAGAA GATTGTATGT
  GCTTTTTAAT TTATATGTTT TTTTTTCTTC ATCTTTTCTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60683967	NES16235425	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	T	T	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48780950					SNP	A	T	T	A	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60683967	NES16235425	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:8542782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21347	CpG island 21347	1177 bp proximal
Rr206822	regulatory region 206822	818 bp proximal
Trpc6	transient receptor potential cation channel, subfamily C, member 6	1361 bp upstream
Tssr83785	transcription start site region 83785	1418 bp upstream
Tssr83786	transcription start site region 83786	1446 bp upstream
Tssr83787	transcription start site region 83787	1719 bp upstream