rs48781911 SNP Detail

Summary

• ID
  rs48781911
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73071829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG GATTTATGTG AGGTGTATGT
  A
  TGTGGGAGGT GAAAGGTCCC AGAGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322708326	CHEV_8_74841884	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48781911					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73071829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	613 bp proximal
Gm63983	predicted gene, 63983	126 bp upstream
Klf2	Kruppel-like transcription factor 2 (lung)	1077 bp upstream
Rr382265	regulatory region 382265	312 bp downstream
Rr400967	regulatory region 400967	841 bp upstream
Rr665299	regulatory region 665299	1293 bp distal
Rr665300	regulatory region 665300	137 bp distal
Rr665301	regulatory region 665301	within coordinates
Rr665302	regulatory region 665302	558 bp proximal
Tssr2606	transcription start site region 2606	915 bp downstream
Tssr77968	transcription start site region 77968	896 bp upstream
Tssr77969	transcription start site region 77969	908 bp upstream
Tssr77970	transcription start site region 77970	1068 bp upstream
Tssr77971	transcription start site region 77971	1548 bp upstream
Tssr77972	transcription start site region 77972	1598 bp upstream
Tssr77973	transcription start site region 77973	1635 bp upstream
Tssr77974	transcription start site region 77974	1691 bp upstream
Tssr77975	transcription start site region 77975	1841 bp upstream