rs48782282 SNP Detail

Summary

• ID
  rs48782282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:52253386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGAGGTT GAAGCCTGAG
  GTCTCTGTGA TGGTTGGTGT GAGGAACTGA GAAGGGTGGT GTATCTATAG TGAGAGACAG
  AGGGAAGGCA GGTGGGAGGT GGCACAGATG AGTTGTCTTC ATCCGTTACA ACAGAAAGCT
  AAAATAACCA GTAAAGGTGT TAAAACATGA TACAGCAGTC ACTACTATTT AGAGGTTTGG
  R
  CATGACTTCT GCCCATAACA GTTTCCTCAA GGAACAGAGA TCACACATGA GGACGGTTGA
  ACCGATAACT GAAGTTTTCC ATTATAGACC GATGATGCTA AATGATTTAT GTGTGGATAT
  GTAAATTTTA CATCTGGAAG AAGTTGTTGA ACCTTGTTTC CTCCAAGTCT ATAAAGAGAA
  GTCTGAAGAC CCCATCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss61399765	NES16786274	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs48782282					SNP	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61399765	NES16786274	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:52253386 () rs orientation: forward

Symbol	Name	Function Class
Gm47957	predicted gene, 47957	within coordinates
Rr211973	regulatory region 211973	within coordinates
Rr211974	regulatory region 211974	1984 bp proximal