rs48782606 SNP Detail

Summary

• ID
  rs48782606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37692681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAATGTAAA TAGGAATCTT TGAAATTATG TTTTTATAAG
  TGTTATGTGG TTCAAACTCT CCATTGTTGC CTCTCCTCAT CTTATTACAT TGGAGAATTG
  R
  CCCCAAATTT GTGCAGACAG CTGGGAAGAG CCAGATAACA CACTCTGATG AGATACTGTA
  TTTCTTACTT GACACTGCAA ATCTCTTCAC GCACAAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134809924	ENSMUSSNP6531724	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320711432	CHEV_3_37537454	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48782606					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37692681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	1149 bp proximal
Gm42922	predicted gene 42922	1573 bp downstream
Rr575523	regulatory region 575523	925 bp proximal
Rr575524	regulatory region 575524	1559 bp proximal
Spry1	sprouty RTK signaling antagonist 1	1415 bp upstream
Tssr28908	transcription start site region 28908	1132 bp upstream
Tssr28909	transcription start site region 28909	1373 bp upstream
Tssr28910	transcription start site region 28910	1396 bp upstream
Tssr28911	transcription start site region 28911	1413 bp upstream
Tssr28912	transcription start site region 28912	1453 bp upstream